GST Reforms: What the Two-Slab Plan and New Compliance Rules Mean for MSMEs

Two-slab GST plan, 30-day e-invoice rule, amnesty, IMS & biometrics—what the 2024–25 GST reforms mean for MSMEs, plus a practical 90-day action plan.

Faiz Askari & SMEStreet Edit Desk
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Introduction: A Defining Moment for GST and MSMEs

Eight years since its rollout, the Goods and Services Tax (GST) is undergoing one of its most significant transformations. The GST Council and a specially constituted Group of Ministers (GoM) have paved the way for “GST 2.0”—a structural overhaul intended to simplify compliance, reduce disputes, and rationalize tax rates. For India’s 63 million Micro, Small, and Medium Enterprises (MSMEs), who make up the backbone of the economy, these reforms are both a challenge and an opportunity.

The big headlines? A two-slab GST rate structure, new e-invoicing timelines, Input Tax Credit (ITC) streamlining via an Invoice Management System (IMS), and relief measures on litigation and fraud detection.


The Two-Slab GST Plan: Simplicity in Sight

The GoM has proposed reducing the complex grid of multiple tax slabs into just two major rates—5% and 18%—alongside a special 40% slab for “sin goods.” The proposal also suggests eliminating the current 12% and 28% slabs.

For MSMEs, this means:

  • Simpler compliance: No more confusion on classification disputes between 12% vs. 18%.

  • Potential price adjustments: Items shifting from 12% to 5% will become cheaper, boosting demand.

  • Competitive edge: Easier communication with customers and vendors across states.

If approved by the GST Council (expected before Diwali 2025), this will mark the most radical simplification since 2017.


Compliance Tightening: E-Invoice Timelines

From 1 April 2025, all businesses with a turnover of ₹10 crore or more must report e-invoices to the GST Invoice Registration Portal (IRP) within 30 days of issuance. Earlier, this applied only to entities above ₹100 crore.

Impact on MSMEs:

  • Tighter discipline: No more backdated invoices beyond 30 days.

  • ERP automation need: Mid-sized MSMEs must align their billing software with IRP.

  • Customer relationships: Late uploads can delay customer ITC claims, risking reputational damage.

This move is aimed at plugging loopholes, but it requires MSMEs to modernize internal systems.


Litigation & Relief: Amnesty and Supreme Court Ruling

Two recent changes bring relief to MSMEs burdened with tax disputes:

  1. Amnesty for old disputes: Non-fraud cases from FY 2017–2020 can settle without interest and penalties if tax dues are paid. This reduces legal costs and stress for small firms.

  2. Supreme Court ruling: MSMEs can now use Input Tax Credit (ITC) to pay the 10% pre-deposit required for filing appeals. This saves valuable working capital that can be reinvested in operations.


ITC Reforms: IMS and GSTR-2B Alignment

GST is becoming increasingly data-driven. The government plans to link Input Tax Credit strictly to actions in the new Invoice Management System (IMS).

  • Businesses will have to accept, reject, or keep invoices pending in the IMS.

  • Only after this will GSTR-2B get generated, which will then feed into GSTR-3B.

This reform will:

  • Reduce fake credit claims.

  • Force MSMEs to reconcile vendor invoices in real-time.

  • Improve transparency and faster ITC realization.


Fraud Prevention: Aadhaar & Biometric Authentication

To clean up GST registrations, biometric Aadhaar authentication and in-person verification are being rolled out nationwide. While this adds one more step to the process, it helps genuine MSMEs by:

  • Reducing shell companies and fake invoicing competition.

  • Enhancing trust in the GST system.


What MSMEs Should Do in the Next 90 Days

  1. E-invoice readiness: Automate invoice uploads and set internal alerts at 20–25 days.

  2. ITC hygiene: Strengthen vendor communication and reconciliation practices.

  3. Scenario simulation: Re-model pricing strategies for 5% and 18% slab outcomes.

  4. Litigation review: Leverage ITC pre-deposit benefits and check amnesty eligibility.

  5. Onboarding documents: Ensure KYC, Aadhaar, and physical verification records are updated for future GST registration needs.


Risks Ahead

  • Revenue pressures: States may push for compensatory cess or limited exemptions.

  • System readiness: MSMEs with limited digital capacity could face penalties.

  • Transition disputes: Moving items between slabs will invite grey areas. Early classification planning is critical.


SMEStreet Analysis: The Road to GST 2.0

For MSMEs, GST reforms in 2025 represent “compliance discipline meets structural simplification.” The two-slab model could bring clarity and predictability, while digital enforcement will ensure a level playing field. However, execution must be MSME-friendly, with grace periods and simplified interfaces.

If rolled out well, GST 2.0 can reduce the compliance burden that MSMEs have endured since 2017, free up working capital, and create an ecosystem where trust and transparency outweigh disputes and litigation.


References

  1. Economic Times – GST Council’s GoM Two-Slab Plan

  2. Business Standard – E-invoice 30-day Timeline for MSMEs

  3. LiveMint – Supreme Court Allows ITC for GST Appeal Deposits

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